返回鼠标选中的文本
<script language=”javascript”>
function getSelectionText() {
if(window.getSelection) {
return window.getSelection().toString();
} else if(document.selection && document.selection.createRange) {
return document.selection.createRange().text;
}
return ”;
}
function goback(){
var str=getSelectionText();
if (str.toString().length>10)
alert(str);
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d.attachEvent(”onmouseup”,goback);
event.cancelBubble =true;
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<html>
<head>
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<body onload=”f()”>
<p>dfsgfffffffffffffffffffffffffjhtyrjkjfkl</p>
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</html>
ruby 这么得到匹配的个数
a =”12hghj12 123 h hj kjhh kjhj1212121212hjkh lk12hjg”
b = a.scan(/12/).count
puts b
squid3 http 代理服务器设置
squid3 http 代理服务器设置
sudo apt-get install squid3
设置也不复杂
主要更改/etc/squid3/squid.conf文件.
犹如下几项:去掉#号
1port :3128
2 visible_hostname
3 将http_access deny all改为allow all
sudo /etc/init.d/squid3 stop
sudo /etc/init.d/squid3 start
就可以了，很简单的。
给方法传递参数，值传递（不改变自身） ，引用传递（改变自身）
int是值传递（不改变自身） ，数组引用传递（改变自身）
C#
using System;
namespace Wrox.ProCSharp.ParameterTestSample
{
class ParameterTest
{
static void SomeFunction(int[] ints, int i)
{
ints[0] = 100;
i = 100;
}
public static int Main()
{
int i = 0;
int[] ints = {0,1,2,4,8};
Console.WriteLine(”i= ” + i);
Console.WriteLine(”Calling SomeFunction…”);
SomeFunction(ints, i);
Console.WriteLine(”i= ” + i);
Console.WriteLine(”ints[0] = ” + ints[0]);
return 0;
}
}
}
ruby中也一样：
class Apple
def method1(ints, i)
ints[0] = 100
i = 100
puts “xx”
end
def method2()
i =0
ints =[3,4,5]
puts i
puts ints
self.method1(ints, i)
puts i
puts ints
end
end
a = Apple.new()
a.method2()
C# 引用类库dll
MathLibrary.cs 文件
namespace Wrox.ProCSharp.Basics
{
public class MathLib
{
public int Add(int x, int y)
{
return x + y;
}}}
MathClient.cs 文件
using System;
namespace Wrox.ProCSharp.Basics
{
class Client
{
public static void Main()
{
MathLib mathObj = new MathLib();
Console.WriteLine(mathObj.Add(7,8));
}
}
}
编译：
csc /t:library MathLibrary.cs
csc MathClient.cs /r:MathLibrary.dll
CPAN 初始设置
在安装Koha的时候，需要提前安装perl的相关模块，这里用到了CPAN，刚开始不知道是什么东东，现把Google来的东西整理在此，以作备份。
CPAN简介
CPAN是Comprehensive Perl Archive Network的缩写，它是一个巨大的Perl软件收藏库，收集了大量有用的Perl模块(modules)及其相关的文件。
CPAN的初始化
当第一次使用CPAN时，需要进行初始化，初始化命令如下：
sudo /etc/perl/CPAN/Config.pm initialized
初始化的过程除了几个选项外，一般是一路回车默认至结束。
若想再次初始化，可以执行如下命令
sudo cpan
cpan> o conf init
初始化信息如下：
CPAN is the world-wide archive of perl resources. It consists of about
100 sites that all replicate the same contents all around the globe.
Many countries have at least one CPAN site already. The resources
found on CPAN are easily accessible with the CPAN.pm module. If you
want to use CPAN.pm, you have to configure it properly.
If you do not want to enter a dialog now, you can answer ‘no’ to this
question and I’ll try to autoconfigure. (Note: you can revisit this
dialog anytime later by typing ‘o conf init’ at the cpan prompt.)
Are you ready for manual configuration? [yes]
The following questions are intended to help you with the
configuration. The CPAN module needs a directory of its own to cache
important index files and maybe keep a temporary mirror of CPAN files.
This may be a site-wide directory or a personal directory.
First of all, I’d like to create this directory. Where?
CPAN build and cache directory? [/root/.cpan]
If you want, I can keep the source files after a build in the cpan
home directory. If you choose so then future builds will take the
files from there. If you don’t want to keep them, answer 0 to the
next question.
How big should the disk cache be for keeping the build directories
with all the intermediate files?
Cache size for build directory (in MB)? [10]
By default, each time the CPAN module is started, cache scanning
is performed to keep the cache size in sync. To prevent from this,
disable the cache scanning with ‘never’.
Perform cache scanning (atstart or never)? [atstart]
To considerably speed up the initial CPAN shell startup, it is
possible to use Storable to create a cache of metadata. If Storable
is not available, the normal index mechanism will be used.
Cache metadata (yes/no)? [yes]
The next option deals with the charset your terminal supports. In
general CPAN is English speaking territory, thus the charset does not
matter much, but some of the aliens out there who upload their
software to CPAN bear names that are outside the ASCII range. If your
terminal supports UTF-8, you say no to the next question, if it
supports ISO-8859-1 (also known as LATIN1) then you say yes, and if it
supports neither nor, your answer does not matter, you will not be
able to read the names of some authors anyway. If you answer no, names
will be output in UTF-8.
Your terminal expects ISO-8859-1 (yes/no)? [yes] no
If you have one of the readline packages (Term::ReadLine::Perl,
Term::ReadLine::Gnu, possibly others) installed, the interactive CPAN
shell will have history support. The next two questions deal with the
filename of the history file and with its size. If you do not want to
set this variable, please hit SPACE RETURN to the following question.
File to save your history? [/root/.cpan/histfile]
Number of lines to save? [100]
The CPAN module can detect when a module that which you are trying to
build depends on prerequisites. If this happens, it can build the
prerequisites for you automatically (’follow’), ask you for
confirmation (’ask’), or just ignore them (’ignore’). Please set your
policy to one of the three values.
Policy on building prerequisites (follow, ask or ignore)? [ask]
The CPAN module will need a few external programs to work properly.
Please correct me, if I guess the wrong path for a program. Don’t
panic if you do not have some of them, just press ENTER for those. To
disable the use of a download program, you can type a space followed
by ENTER.
Where is your gzip program? [/bin/gzip]
Where is your tar program? [/bin/tar]
Where is your unzip program? [/usr/bin/unzip]
Where is your make program? [/usr/bin/make]
Warning: lynx not found in PATH
Where is your lynx program? [] /usr/bin
Where is your wget program? [/usr/bin/wget]
Warning: ncftpget not found in PATH
Where is your ncftpget program? []
Warning: ncftp not found in PATH
Where is your ncftp program? []
Where is your ftp program? [/usr/bin/ftp]
Where is your gpg program? [/usr/bin/gpg]
What is your favorite pager program? [/usr/bin/less]
What is your favorite shell? [/bin/bash]
Every Makefile.PL is run by perl in a separate process. Likewise we
run ‘make’ and ‘make install’ in processes. If you have any
parameters (e.g. PREFIX, LIB, UNINST or the like) you want to pass
to the calls, please specify them here.
If you don’t understand this question, just press ENTER.
Parameters for the ‘perl Makefile.PL’ command?
Typical frequently used settings:
PREFIX=~/perl non-root users (please see manual for more hints)
Your choice: [INSTALLDIRS=site]
Parameters for the ‘make’ command?
Typical frequently used setting:
-j3 dual processor system
Your choice: [] -j3 ＃双核才需要填写
Parameters for the ‘make install’ command?
Typical frequently used setting:
UNINST=1 to always uninstall potentially conflicting files
Your choice: []
Sometimes you may wish to leave the processes run by CPAN alone
without caring about them. As sometimes the Makefile.PL contains
question you’re expected to answer, you can set a timer that will
kill a ‘perl Makefile.PL’ process after the specified time in seconds.
If you set this value to 0, these processes will wait forever. This is
the default and recommended setting.
Timeout for inactivity during Makefile.PL? [0]
If you’re accessing the net via proxies, you can specify them in the
CPAN configuration or via environment variables. The variable in
the $CPAN::Config takes precedence.
Your ftp_proxy?
Your http_proxy?
Your no_proxy?
You have no /root/.cpan/sources/MIRRORED.BY
I’m trying to fetch one
CPAN: LWP::UserAgent loaded ok
Fetching with LWP:
ftp://ftp.perl.org/pub/CPAN/MIRRORED.BY
Now we need to know where your favorite CPAN sites are located. Push
a few sites onto the array (just in case the first on the array won’t
work). If you are mirroring CPAN to your local workstation, specify a
file: URL.
First, pick a nearby continent and country (you can pick several of
each, separated by spaces, or none if you just want to keep your
existing selections). Then, you will be presented with a list of URLs
of CPAN mirrors in the countries you selected, along with previously
selected URLs. Select some of those URLs, or just keep the old list.
Finally, you will be prompted for any extra URLs — file:, ftp:, or
http: — that host a CPAN mirror.
(1) Africa
(2) Asia
(3) Central America
(4) Europe
(5) North America
(6) Oceania
(7) South America
Select your continent (or several nearby continents) [] 2
Sorry! since you don’t have any existing picks, you must make a
geographic selection.
(1) China
(2) Hong Kong
(3) Indonesia
(4) Israel
(5) Japan
(6) Korea
(7) Pakistan
(8) Philippines
(9) Republic of Korea
(10) Saudi Arabia
(11) Singapore
(12) Taiwan
(13) Thailand
(14) Turkey
Select your country (or several nearby countries) [] 1 2 5 12
(1) ftp://ftp.cuhk.edu.hk/pub/packages/perl/CPAN/ (Hong Kong)
(2) http://mirrors.geoexpat.com/cpan/ (Hong Kong)
(3) ftp://ftp.dti.ad.jp/pub/lang/CPAN/ (Japan)
(4) ftp://ftp.jaist.ac.jp/pub/CPAN/ (Japan)
(5) ftp://ftp.kddilabs.jp/CPAN/ (Japan)
(6) ftp://ftp.nara.wide.ad.jp/pub/CPAN/ (Japan)
(7) ftp://ftp.riken.jp/lang/CPAN/ (Japan)
(8) ftp://ftp.ring.gr.jp/pub/lang/perl/CPAN/ (Japan)
(9) ftp://ftp.u-aizu.ac.jp/pub/CPAN (Japan)
(10) ftp://ftp.yz.yamagata-u.ac.jp/pub/lang/cpan/ (Japan)
(11) ftp://cpan.cdpa.nsysu.edu.tw/Unix/Lang/CPAN/ (Taiwan)
(12) ftp://cpan.cs.pu.edu.tw/pub/CPAN (Taiwan)
(13) ftp://cpan.nctu.edu.tw/ (Taiwan)
(14) ftp://ftp.isu.edu.tw/pub/CPAN (Taiwan)
(15) ftp://ftp.ncu.edu.tw/CPAN/ (Taiwan)
(16) ftp://ftp.stu.edu.tw/CPAN (Taiwan)
2 more items, hit SPACE RETURN to show them
Select as many URLs as you like (by number),
put them on one line, separated by blanks, e.g. ‘1 4 5′
(or just hit RETURN to keep your previous picks) [18] 1 2 3 11 12 13 14 15 16
Enter another URL or RETURN to quit: []
New set of picks:
ftp://ftp.cuhk.edu.hk/pub/packages/perl/CPAN/
http://mirrors.geoexpat.com/cpan/
ftp://ftp.dti.ad.jp/pub/lang/CPAN/
ftp://cpan.cdpa.nsysu.edu.tw/Unix/Lang/CPAN/
ftp://cpan.cs.pu.edu.tw/pub/CPAN
ftp://cpan.nctu.edu.tw/
ftp://ftp.isu.edu.tw/pub/CPAN
ftp://ftp.ncu.edu.tw/CPAN/
ftp://ftp.stu.edu.tw/CPAN
commit: wrote /etc/perl/CPAN/Config.pm
cpan> quit
Terminal does not support GetHistory.
Lockfile removed.
root@ubuntu:
CPAN的使用方法
一、安装模块
例如需要安装CGI::Session模块，可以有如下两种方法：
1、直接法
sudo cpan CGI::Session
2、间接法
sudo cpan
cpan> install CGI::Session
cpan> quit
二、在CPAN中查询模块
sudo cpan
cpan> d /CGI::Session/
cpan> quit
下面是摘引自Fed Chu’s Blog的“用CPAN安装perl module”，供参考。
1. 首先配置CPAN Module，方法是在bash下面运行
$ perl -MCPAN -eshell
配置过程会询问一些问题，其中CPAN的镜像可以选择http://cpan.linuxforum.net/。
2. 接下来要更新CPAN Module，而不是直接装LWP。否则会遇到undefined subroutine &Digest::base::new之类的错误。方法是运行
cpan> install Bundle::CPAN
这一步是关键，切记切记。我开始不知道，还在网上搜索这个错误信息，发现有人说是Perl的问题，我就把整个Cygwin更新到1.5.19.4，结果啥用也没有，还把其它东西弄得一塌糊涂。
3. 装好新的CPAN Module，先退出，然后再运行1里面的命令进入CPAN的shell，这时就可以装LWP了
cpan> install Bundle::LWP
安装Bundle::LWP意味着不仅安装LWP，而且安装它需要的其它module。
下面转自程序人生的“Perl 下面用cpan安装相关的模块问题”
最近有玩一下Perl，想用一下cpan中的一些不错的模块，但安装的过程中老是提示make…. not ok，我的服务器环境是freebsd6.2 （升级过ports) 现在的perl 版本是perl 5.8.8
针对上面的错误我的做法是重装，经过反复的重装，最后终于OK，下面分享一下我的重装过程。
如我要安装HTML::TreeBuilder
第一步：检查一下HTML::TreeBuilder模块是否存在于系统中，运行下面的两个指令，
官方给出的方法:
#perl -MHTML::TreeBuilder -e 1
如果运行上面的命令未有警告的话说明该模块已经安装了，需要看相关的使用说明可以使用下面的命令
#perldoc HTML::TreeBuilder
第二种方法其它已经在上面有提到过，即用查看帮助的方法
#perldoc HTML::TreeBuilder
如果有帮助信息的，则说明已安装，否则未安装
第二步：删除CPAN的配置
#cd /usr/local/lib/perl5/5.8.8/CPAN
#rm -f Config.pm
第三步：重新安装 CPAN
#perl -MCPAN -e shell
运行上面的命令后系统会提示这是首次运行cpan，要做一些设置，一般不知道是什么意思时只需要一直按“回车”即可！
下面贴出我的CPAN配置文件
Config.pm:
[code]
# This is CPAN.pm’s systemwide configuration file. This file provides
# defaults for users, and the values can be changed in a per-user
# configuration file. The user-config file is being looked for as
# ~/.cpan/CPAN/MyConfig.pm.
$CPAN::Config = {
‘build_cache’ => q[10],
‘build_dir’ => q[/root/.cpan/build],
‘cache_metadata’ => q[1],
‘cpan_home’ => q[/root/.cpan],
‘dontload_hash’ => { },
‘ftp’ => q[/usr/bin/ftp],
‘ftp_proxy’ => q[],
‘getcwd’ => q[cwd],
‘gpg’ => q[],
‘gzip’ => q[/usr/bin/gzip],
‘histfile’ => q[/root/.cpan/histfile],
‘histsize’ => q[100],
‘http_proxy’ => q[],
‘inactivity_timeout’ => q[0],
‘index_expire’ => q[1],
‘inhibit_startup_message’ => q[0],
‘keep_source_where’ => q[/root/.cpan/sources],
‘lynx’ => q[],
‘make’ => q[/usr/bin/make],
‘make_arg’ => q[],
‘make_install_arg’ => q[],
‘makepl_arg’ => q[],
‘ncftp’ => q[],
‘ncftpget’ => q[],
‘no_proxy’ => q[],
‘pager’ => q[more],
‘prerequisites_policy’ => q[ask],
’scan_cache’ => q[atstart],
’shell’ => q[/bin/csh],
‘tar’ => q[/usr/bin/tar],
‘term_is_latin’ => q[1],
‘unzip’ => q[/usr/local/bin/unzip],
‘urllist’ => [q[ftp://cpan.hexten.net/], q[ftp://cpan.hostrack.net/pub/CPAN], q[ftp://cpan.pair.com/pub/CPAN/]],
‘wget’ => q[/usr/bin/wget],
};
[/code]
使用CPAN安装Perl模块
Perl到了第五版增加了模块的概念，用来提供面向对象编程的能力。这是Perl语言发展史上
的一个里程碑。此后，广大自由软件爱好者开发了大量功能强大、构思精巧的Perl模块，极大地
扩展了Perl语言的功能。CPAN（Comprehensive Perl Archive Network）是internet上Perl模块
最大的集散地，包含了现今公布的几乎所有的perl模块。
几个主要的CPAN站点有：
国内：ftp://freesoft.cgi.gov.cn/pub/languages/perl/CPAN
http://cpan.qz.fj.cn/
国外：http://www.cpan.org/
http://www.perl.com/CPAN-local/
我在这里介绍一下各种平台下perl模块的安装方法。以安装DBI模块为例。
1、Linux/Unix下的安装方法：
Linux/Unix下安装Perl模块有两种方法：手工安装和自动安装。第一种方法是从CPAN上下载
您需要的模块，手工编译、安装。第二种方法是联上internet，使用一个叫做CPAN的模块自动完
成下载、编译、安装的全过程。
a、手工安装的步骤：
从CPAN下载了DBI模块1.13版的压缩文件DBI-1.13.tar.gz，假设放在/usr/local/src/下。
cd /usr/local/src
解压缩这个文件：
tar xvzf DBI-1.13.tar.gz
这时会新建一个DBI-1.13的目录。
cd DBI-1.13
生成makefile：
perl Makefile.PL
建立模块
make
测试模块
make test
如果测试结果报告“all test ok”，您就可以放心地安装编译好的模块了。安装模块前，先要
确保您对perl5安装目录有可写权限（通常以su命令获得），执行：
make install
现在，写个程序试试吧。
#!/usr/bin/perl -w
use strict;
use DBI;
..
上述步骤适合于Linux/Unix下绝大多数的Perl模块。可能还有少数模块的安装方法略有差别，
所以最好先看看安装目录里的README或INSTALL。另外，上述过程是针对动态链接的Perl编译
器（所有Linux下预安装的Perl都是动态链接的），如果您在使用一个静态链接的Perl，您需要将
新的模块静态链接到perl编译器中，可能还需要重启机器。
b、使用CPAN模块自动安装：
安装前需要先联上线，并且您需要取得root权限。
perl -MCPAN -e shell
初次运行CPAN时需要做一些设置，如果您的机器是直接与internet相联（拨号上网、专线，etc.），
那么一路回车就行了，只需要在最后选一个离您最近的CPAN镜像站点。例如我选的是位于国内的
中国自由软件库ftp://freesoft.cgi.gov.cn/pub/languages/perl/CPAN 。否则，如果您的机器
位于防火墙之后，还需要设置ftp代理或http代理。
获得帮助
cpan>h
列出CPAN上所有模块的列表
cpan>m
安装模块
cpan>install DBI
自动完成DBI模块从下载到安装的全过程。
退出
cpan>q
2、Win32下的安装方法：
在Win32下，建议使用ActiveState的Perl for Win32，即ActivePerl。ActivePerl的主页在：
http://www.activestate.com/ 。在Win32下，最好也使用专门为ActivePerl定制的Perl模块。从
CPAN下载的Perl模块不能很好地在ActivePerl下使用。类似于CPAN模块，ActiveState也开发
了一个自动安装工具叫做PPM（Perl Package Manager）。
最通常的安装方法是：
首先联上线
在dos命令行下启动ppm
ppm
获得帮助
PPM>h
列出ActiveState站点上所有为Perl模块的清单。
PPM>search
安装模块
PPM>install DBI
自动完成DBI模块从下载到安装的全过程。
退出
PPM>q
如果您的机器位于防火墙之后，通过http代理上网，那么可以使用下面的方法。
对于老的基于perl 5.005的ActivePerl版本（ActivePerl 522以下版本，不包括ActivePerl 522），从
http://www.ActiveState.com/ppmpackages/5.005/zips/下载您需要的Perl模块，例如DBI.zip。
将其解压缩在C:\TEMP\DBI下
cd \TEMP\DBI
ppm install DBI.PPD
最新的基于perl 5.6的ActivePerl版本（ActivePerl 613及以上版本）的安装方法略有不同。安
装ActivePerl 613前需要先安装Microsoft的Windows Installer。
Windows Installer从这里下载：
http://activestate.com/download/contrib/Microsoft/9x/InstMsi.exe
ActivePerl 613从这里下载：
http://activestate.com/download/ … ePerl-5.6.0.613.msi
对于基于perl 5.6的ActivePerl版本，从
http://www.activestate.com/PPMPackages/5.6/
下载您需要的Perl模块的安装描述文件，例如DBI.PPD
安装模块前需要先联上线
ppm install DBI.PPD。
If you are already familiar with installing CPAN modules, go-perl is no different from any other. If you aren’t, you may wish to experiment now.
Try typing the following:
perl -MCPAN -e shell
install GO::Parser
The following may also work:
cpan GO::Parser
If this is the first time using the CPAN installer, you will be asked a barrage of questions. You are best to answer with the defaults – you can always change this later.
If you do NOT have access to the system-wide perl directories on your system (these will typically be in /Library or /usr/local), then you should either get some help setting up CPAN for use with your system, OR you should follow an alternate protocol below. (You may wish to modify the value of PREFIX to ~ in the CPAN setup, as detailed in protocol III)
If you are on OS X you may need to do this:
sudo cpan GO::Parser
Providing you do have write-access to these directories, the above commands should hopefully go smoothly. When installing go-perl, you may be asked if you wish to also install Data::Stag and IO::String – you should answer yes
After this, you should be ready to use go-perl! The scripts should be in your path and the libraries should be in the standard place. You may wish to start by trying “map2slim” or “go2obo_xml”
There are certain applications that require additional third-party modules. All these are available from CPAN, and can be installed in the above manner. For example, if you try and use the go-filter-subset.pl script to generate a PNG image of an ontology subgraph, the system will complain you do not have the module “GraphViz” installed. To install this, simply type:
perl -MCPAN -e shell
install GraphViz
Depending on what you use go-perl for, you may not ever need to install other CPAN modules
gene Ontology mysql database 本地搭建
http://www.geneontology.org/GO.downloads.database.shtml
http://archive.geneontology.org/latest-full/
go_-
YYYYMM is the release date (the release export usually follows some
time after the monthly release, due to time taken to build)
the DATASET is one of:
——-
* termdb – a database containing just the information on the
GO terms and relationships. These are the table that are populated:
term GO controlled vocab terms
term2term relationships between GO terms
term_definition definitions of terms
dbxref external database identifier entities
term_dbxref links from terms to other databases
term_synonym synonyms for terms
graph_path transitive closure (all paths) in graph
* assocdb – a database containing both the GO vocabulary and
associations between GO terms and gene products. This database
subsumes termdb. These are the extra tables that are populated:
gene_product gene or protein or entity annotated
association link between gene product and GO term
evidence evidence type and reference for an assoc
gene_product_count recursive product counts per GO term
*seqdb – a database containing GO terms, gene products and the
sequences associated with these gene products. This db subsumes the
two above. It populates these additional tables:
seq biological sequence
gene_product_seq link between a product and a sequence
seq_dbxref external database links for a sequence
NOTE: there are other unpopulated tables – we may or may not decide to
populate these at some point in the future.
NOTE: The production version of seqdb with the full database has been
suspended until further notice.
*seqdblite – this is the same as seqdb, except all IEA associations
have been removed. The IEA associations provide relatively little
value compared to the curated associations, and they slow querying
down immensely. This is the distribution that AmiGO runs off of. We
are working on optimisations to allow AmiGO to run off of the full
seqdb release.
the TYPE is either
—-
.rdf-xml – RDF XML export of the database. this comes as one single
file. Note there is no RDF XML export of seqdb, as we do not include
sequences in the xml yet. We do not include IEA evidence associations
in the xml. We may decide to split this xml file into multiple files
at a later date.
.obo-xml – OBO XML Export. Currently ontology only
.owl – OWL Export. Currently ontology only
.tables – this is a directory containing the MySQL dump, see below
.sql – SQL CREATE TABLE and INSERT statements for building a local
instance of the database. equivalent to the .tables TYPE (but slower
to load)
安装termdb – a database containing just the information on the GO terms and relationships. These are the table that are populated:
下载termdb的所有文件:(go_200902-termdb-tables 这个文件是mysql的，只需要这个就可以了。)
1。
The database export was prepared from a mysql db – you should have no
problem importing it:
tar -zxvf go-YYYYMM-TYPE-tables.gz
cd
echo “create database mygo” | mysql -u root -p
cat *.sql | mysql mygo -u root -p
mysqlimport -L mygo *.txt -u root -p
Note: if you are using Windows, you may see warning messages when
loading some tables; to avoid this, load tables this way:
mysql> load data infile
“c:\\download\\GO\\july-release\\go_200307-assocdb-table
s\\association.txt” into table association lines terminated by ‘\r\n’;
This can be avoided if you disable “TAR file smart CR/LF conversion”
when using Winzip (thanks to Henrik Edgren for the tip
We are unable to support Windows users – please refer to your MySQL
documentation; if you experience other problems, you may wish to try
posting a question to the go-database mail list to see if other
Windows users have any advice.
2.安装好了之后，term 里面就有数据了
use GO::AppHandle;
my $dbname = “mygo”;
my $dbhost = “localhost”;
# my $mysqlhost = “localhost”;
# connect to a database on a specific host
$apph = GO::AppHandle->connect(-dbname=>$dbname, -dbhost=>”localhost”,-dbuser=>”root”,-dbauth=>”password”);
# EXAMPLE 1
# fetching a GO term from the datasource
$term = $apph->get_term({acc=>”GO:0003677″});
printf
“GO term; name=%s GO ID=%s\n”,
$term->name(), $term->public_acc();
that’s ok.
example:
http://wiki.geneontology.org/index.php/Example_Queries
http://cpansearch.perl.org/src/CMUNGALL/go-db-perl-0.01/doc/go-db-perl-doc.html
bioinformatics database2
101 MA Adult Mouse Anatomical Dictionary; part of Gene Expression Database Identifier http://www.informatics.jax.org/ http://www.informatics.jax.org/searches/AMA.cgi?id=MA:[example_id] http://www.informatics.jax.org/searches/AMA.cgi?id=MA:0000003 \N
102 MaizeGDB MaizeGDB MaizeGDB Object ID Number http://www.maizegdb.org http://www.maizegdb.org/cgi-bin/id_search.cgi?id=[example_id] http://www.maizegdb.org/cgi-bin/id_search.cgi?id=881225 \N
103 MaizeGDB_Locus MaizeGDB Maize gene name http://www.maizegdb.org http://www.maizegdb.org/cgi-bin/displaylocusresults.cgi?term=[example_id] http://www.maizegdb.org/cgi-bin/displaylocusresults.cgi?term=ZmPK1 \N
104 MEDLINE The Medline literature database Identifier \N \N \N \N
105 MEROPS MEROPS – the Peptidase Database Identifier http://merops.sanger.ac.uk/ http://merops.sanger.ac.uk/cgi-bin/pepsum?mid=[example_id] http://merops.sanger.ac.uk/cgi-bin/pepsum?mid=A08.001 \N
106 MEROPS_fam MEROPS: The Peptidase Database Peptidase family identifier http://merops.sanger.ac.uk/ http://merops.sanger.ac.uk/cgi-bin/famsum?family=[example_id] http://merops.sanger.ac.uk/cgi-bin/famsum?family=m18 \N
107 MeSH Medical Subject Headings MeSH heading http://www.nlm.nih.gov/mesh/2005/MBrowser.html http://www.nlm.nih.gov/cgi/mesh/2005/MB_cgi?mode=&term=[example_id] http://www.nlm.nih.gov/cgi/mesh/2005/MB_cgi?mode=&term=mitosis \N
108 MetaCyc The Metabolic Encyclopedia of metabolic and other pathways Identifier (pathway or reaction) http://metacyc.org/ http://biocyc.org/META/NEW-IMAGE?type=NIL&object=[example_id] http://biocyc.org/META/NEW-IMAGE?type=NIL&object=GLUTDEG-PWY \N
109 MGD Mouse Genome Database Gene symbol http://www.informatics.jax.org/ \N \N \N
110 MGI Mouse Genome Informatics Accession number http://www.informatics.jax.org/ http://www.informatics.jax.org/searches/accession_report.cgi?id=MGI:[example_id] http://www.informatics.jax.org/searches/accession_report.cgi?id=MGI:80863 \N
111 MIPS_funcat MIPS Functional Catalogue Identifier http://mips.gsf.de/proj/funcatDB/ http://mips.gsf.de/cgi-bin/proj/funcatDB/search_advanced.pl?action=2&wert=[example_id] http://mips.gsf.de/cgi-bin/proj/funcatDB/search_advanced.pl?action=2&wert=11.02 \N
112 MO The MGED Ontology ontology term http://mged.sourceforge.net/ontologies/MGEDontology.php http://mged.sourceforge.net/ontologies/MGEDontology.php#[example_id] http://mged.sourceforge.net/ontologies/MGEDontology.php#Action \N
113 MultiFun MultiFun, a cellfunction assignment schema \N http://genprotec.mbl.edu/files/Multifun.html \N \N \N
114 NASC_code Nottingham Arabidopsis Stock Centre Seeds Database NASC code Identifier http://arabidopsis.info http://seeds.nottingham.ac.uk/NASC/stockatidb.lasso?code=[example_id] http://seeds.nottingham.ac.uk/NASC/stockatidb.lasso?code=N3371 \N
115 NC-IUBMB Nomenclature Committee of the International Union of Biochemistry and Molecular Biology \N http://www.chem.qmw.ac.uk/iubmb/ \N \N \N
116 NCBI National Center for Biotechnology Information, Bethesda Prefix http://www.ncbi.nlm.nih.gov/ \N \N \N
117 NCBI_Gene NCBI Gene Identifier http://www.ncbi.nlm.nih.gov/ http://www.ncbi.nlm.nih.gov/sites/entrez?cmd=Retrieve&db=gene&list_uids=[example_id] http://www.ncbi.nlm.nih.gov/sites/entrez?cmd=Retrieve&db=gene&list_uids=4771 \N
118 NCBI_gi NCBI databases Identifier http://www.ncbi.nlm.nih.gov/ http://www.ncbi.nlm.nih.gov/entrez/viewer.fcgi?val=[example_id] http://www.ncbi.nlm.nih.gov/entrez/viewer.fcgi?val=113194944 \N
119 NCBI_GP NCBI GenPept Protein identifier http://www.ncbi.nlm.nih.gov/ http://www.ncbi.nlm.nih.gov/entrez/viewer.fcgi?db=protein&val=[example_id] http://www.ncbi.nlm.nih.gov/entrez/viewer.fcgi?db=protein&val=EAL72968 \N
120 NCBI_NM NCBI RefSeq mRNA identifier http://www.ncbi.nlm.nih.gov/ \N \N \N
121 NCBI_NP NCBI RefSeq Protein identifier http://www.ncbi.nlm.nih.gov/ \N \N \N
122 NMPDR National Microbial Pathogen Data Resource Identifier http://www.nmpdr.org http://www.nmpdr.org/linkin.cgi?id=[example_id] http://www.nmpdr.org/linkin.cgi?id=fig|306254.1.peg.183 \N
123 OMIM Mendelian Inheritance in Man Identifier http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=OMIM http://www.ncbi.nlm.nih.gov/entrez/dispomim.cgi?id=[example_id] http://www.ncbi.nlm.nih.gov/htbin-post/entrez/dispomim.cgi?id=190198 \N
124 PAMGO Plant-Associated Microbe Gene Ontology Interest Group \N http://pamgo.vbi.vt.edu/ \N \N \N
125 PAMGO_GAT Genome Annotation Tool (Agrobacterium tumefaciens C58); PAMGO Interest Group Gene http://agro.vbi.vt.edu/public/ http://agro.vbi.vt.edu/public/servlet/GeneEdit?&Search=Search&level=2&genename=[example_id] http://agro.vbi.vt.edu/public/servlet/GeneEdit?&Search=Search&level=2&genename=atu0001 \N
126 PAMGO_MGG Magnaporthe grisea Database at North Carolina State University; member of PAMGO Interest Group Locus http://scotland.fgl.ncsu.edu/smeng/GoAnnotationMagnaporthegrisea.html http://scotland.fgl.ncsu.edu/cgi-bin/adHocQuery.cgi?adHocQuery_dbName=smeng_goannotation&Action=Data&QueryName=Functional+Categorization+of+MGG+GO+Annotation&P_DBObjectSymbol=&P_EvidenceCode=&P_Aspect=&P_DBObjectSynonym=&P_KeyWord=[example_id] http://scotland.fgl.ncsu.edu/cgi-bin/adHocQuery.cgi?adHocQuery_dbName=smeng_goannotation&Action=Data&QueryName=Functional+Categorization+of+MGG+GO+Annotation&P_DBObjectSymbol=&P_EvidenceCode=&P_Aspect=&P_DBObjectSynonym=&P_KeyWord=MGG_05132 \N
127 PAMGO_VMD Virginia Bioinformatics Institute Microbial Database; member of PAMGO Interest Group Gene identifier http://phytophthora.vbi.vt.edu http://vmd.vbi.vt.edu/cgi-bin/browse/go_detail.cgi?gene_id=[example_id] http://vmd.vbi.vt.edu/cgi-bin/browse/go_detail.cgi?gene_id=109198 \N
128 PANTHER Protein ANalysis THrough Evolutionary Relationships Classification System \N http://www.pantherdb.org/ \N \N \N
129 PATO Phenotypic quality ontology Identifier http://www.bioontology.org/wiki/index.php/PATO:Main_Page \N \N \N
130 PATRIC PathoSystems Resource Integration Center at the Virginia Bioinformatics Institute Feature identifieer http://patric.vbi.vt.edu http://patric.vbi.vt.edu/gene/overview.php?fid=[example_id] http://patric.vbi.vt.edu/gene/overview.php?fid=cds.000002.436951 \N
131 PDB Protein Data Bank Identifier http://www.rcsb.org/pdb/ http://www.rcsb.org/pdb/cgi/explore.cgi?pdbId=[example_id] http://www.rcsb.org/pdb/cgi/explore.cgi?pdbId=1A4U \N
132 Pfam Pfam: Protein families database of alignments and HMMs Accession number http://www.sanger.ac.uk/Software/Pfam/ http://www.sanger.ac.uk/cgi-bin/Pfam/getacc?[example_id] http://www.sanger.ac.uk/cgi-bin/Pfam/getacc?PF00046 \N
133 PfamB Pfam-B supplement to Pfam Accession number http://www.sanger.ac.uk/Software/Pfam/ \N \N \N
134 PharmGKB_PA The Pharmacogenetics and Pharmacogenomics Knowledge Base \N http://www.pharmgkb.org http://www.pharmgkb.org/do/serve?objId=[example_id] http://www.pharmgkb.org/do/serve?objId=PA267 \N
135 PharmGKB_PGKB The Pharmacogenetics and Pharmacogenomics Knowledge Base \N http://www.pharmgkb.org http://www.pharmgkb.org/do/serve?objId=[example_id] http://www.pharmgkb.org/do/serve?objId=PA267 \N
136 PINC Proteome Inc.; represents GO annotations created in 2001 for NCBI and extracted into GOA from EntrezGene \N http://www.proteome.com/ \N \N \N
137 PIR Protein Information Resource Accession number http://pir.georgetown.edu/ http://pir.georgetown.edu/cgi-bin/pirwww/nbrfget?uid=[example_id] http://pir.georgetown.edu/cgi-bin/pirwww/nbrfget?uid=I49499 \N
138 PIRSF PIR Superfamily Classification System Identifier http://pir.georgetown.edu/pirsf/ http://pir.georgetown.edu/cgi-bin/ipcSF?id=[example_id] http://pir.georgetown.edu/cgi-bin/ipcSF?id=SF002327 \N
139 PMCID Pubmed Central Identifier http://www.pubmedcentral.nih.gov/ http://www.ncbi.nlm.nih.gov/sites/entrez?db=pmc&cmd=search&term=[example_id] http://www.ncbi.nlm.nih.gov/sites/entrez?db=pmc&cmd=search&term=PMC201377 \N
140 PMID PubMed Identifier http://www.ncbi.nlm.nih.gov/PubMed/ http://www.ncbi.nlm.nih.gov/pubmed/[example_id] http://www.ncbi.nlm.nih.gov/pubmed/4208797 \N
141 PO Plant Ontology Consortium Database Identifier http://www.plantontology.org/ http://www.plantontology.org/amigo/go.cgi?action=query&view=query&search_constraint=terms&query=PO:[example_id] http://www.plantontology.org/amigo/go.cgi?action=query&view=query&search_constraint=terms&query=PO:0009004 \N
142 POC Plant Ontology Consortium \N \N \N \N \N
143 Pompep Schizosaccharomyces pombe protein data Gene/protein identifier ftp://ftp.sanger.ac.uk/pub/yeast/pombe/Protein_data/ \N \N \N
144 PPI The Pseudomonas syringae community annotation project \N http://genome.pseudomonas-syringae.org/ \N \N \N
145 PRINTS PRINTS compendium of protein fingerprints Accession http://www.bioinf.manchester.ac.uk/dbbrowser/PRINTS/ http://www.bioinf.manchester.ac.uk/cgi-bin/dbbrowser/sprint/searchprintss.cgi?display_opts=Prints&category=None&queryform=false®expr=off&prints_accn=[example_id] http://www.bioinf.manchester.ac.uk/cgi-bin/dbbrowser/sprint/searchprintss.cgi?display_opts=Prints&category=None&queryform=false®expr=off&prints_accn=PR00025 \N
146 ProDom ProDom protein domain families automatically generated from Swiss-Prot and TrEMBL Accession http://prodes.toulouse.inra.fr/prodom/current/html/home.php http://prodes.toulouse.inra.fr/prodom/current/cgi-bin/request.pl?question=DBEN&query=[example_id] http://prodes.toulouse.inra.fr/prodom/current/cgi-bin/request.pl?question=DBEN&query=PD000001 \N
147 Prosite Prosite. Database of protein families and domains Accession number http://www.expasy.ch/prosite/ http://www.expasy.ch/cgi-bin/prosite-search-ac?[example_id] http://www.expasy.ch/cgi-bin/prosite-search-ac?PS00365 \N
148 protein_id The protein identifier shared by DDBJ/EMBL-bank/GenBank nucleotide sequence databases Identifier \N \N \N \N
149 PROW Protein Reviews on the Web \N http://www.ncbi.nlm.nih.gov/prow/ \N \N \N
150 PseudoCAP Pseudomonas Genome Project Identifier http://v2.pseudomonas.com/ http://v2.pseudomonas.com/getAnnotation.do?locusID=[example_id] http://v2.pseudomonas.com/getAnnotation.do?locusID=PA4756 \N
151 PSI-MI Proteomic Standard Initiative for Molecular Interaction Interaction identifier http://psidev.sourceforge.net/mi/xml/doc/user/index.html \N \N \N
152 PSI-MOD Proteomics Standards Initiative protein modification ontology Protein modification identifier http://psidev.sourceforge.net/mod/ http://www.ebi.ac.uk/ontology-lookup/?termId=MOD:[example_id] http://www.ebi.ac.uk/ontology-lookup/?termId=MOD:00219 \N
153 PSORT PSORT protein subcellular localization databases and prediction tools for bacteria \N http://www.psort.org/ \N \N \N
154 pTARGET pTARGET Prediction server for protein subcellular localization \N http://bioinformatics.albany.edu/~ptarget/ \N \N \N
155 PubChem_BioAssay NCBI PubChem database of bioassay records Identifier http://pubchem.ncbi.nlm.nih.gov/ http://pubchem.ncbi.nlm.nih.gov/assay/assay.cgi?aid=[example_id] http://pubchem.ncbi.nlm.nih.gov/assay/assay.cgi?aid=177 \N
156 PubChem_Compound NCBI PubChem database of chemical structures Identifier http://pubchem.ncbi.nlm.nih.gov/ http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?CMD=search&DB=pccompound&term=[example_id] http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?CMD=search&DB=pccompound&term=2244 \N
157 PubChem_Substance NCBI PubChem database of chemical substances Identifier http://pubchem.ncbi.nlm.nih.gov/ http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?CMD=search&DB=pcsubstance&term=[example_id] http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?CMD=search&DB=pcsubstance&term=4594 \N
158 Reactome Reactome – a curated knowledgebase of biological pathways Identifier http://www.reactome.org/ http://www.reactome.org/cgi-bin/eventbrowser_st_id?ST_ID=[example_id] http://www.reactome.org/cgi-bin/eventbrowser_st_id?ST_ID=REACT_1240.1 \N
159 REBASE REBASE, The Restriction Enzyme Database Restriction enzyme name http://rebase.neb.com/rebase/rebase.html http://rebase.neb.com/rebase/enz/[example_id].html http://rebase.neb.com/rebase/enz/EcoRI.html \N
160 RefSeq RefSeq Identifier http://www.ncbi.nlm.nih.gov/RefSeq/ http://www.ncbi.nlm.nih.gov/entrez/viewer.fcgi?val=[example_id] http://www.ncbi.nlm.nih.gov/entrez/viewer.fcgi?val=XP_001068954 \N
161 RefSeq_NA RefSeq (Nucleic Acid) Identifier http://www.ncbi.nlm.nih.gov/RefSeq/ http://www.ncbi.nlm.nih.gov/entrez/viewer.fcgi?val=[example_id] http://www.ncbi.nlm.nih.gov/entrez/viewer.fcgi?val=NC_000913 \N
162 RefSeq_Prot RefSeq (Protein) Identifier http://www.ncbi.nlm.nih.gov/RefSeq/ http://www.ncbi.nlm.nih.gov/entrez/viewer.fcgi?val=[example_id] http://www.ncbi.nlm.nih.gov/entrez/viewer.fcgi?val=YP_498627 \N
163 RESID RESID Database of Protein Modifications Identifier ftp://ftp.ncifcrf.gov/pub/users/residues/ \N \N \N
164 RGD Rat Genome Database Accession Number http://rgd.mcw.edu/ http://rgd.mcw.edu/generalSearch/RgdSearch.jsp?quickSearch=1&searchKeyword=[example_id] http://rgd.mcw.edu/generalSearch/RgdSearch.jsp?quickSearch=1&searchKeyword=2004 \N
165 RI Roslin Institute \N http://www.roslin.ac.uk/ \N \N \N
166 RNAmods The RNA Modification Database Identifier http://medlib.med.utah.edu/RNAmods/ http://medlib.med.utah.edu/cgi-bin/rnashow.cgi?[example_id] http://medlib.med.utah.edu/cgi-bin/rnashow.cgi?037 \N
167 Sanger The Wellcome Trust Sanger Institute \N http://www.sanger.ac.uk/ \N \N \N
168 SEED The SEED; The Project to Annotate the First 1000 Sequenced Genomes, Develop Detailed Metabolic Reconstructions, and Construct the Corresponding Stoichiometric Matrices Identifier http://www.theseed.org http://www.theseed.org/linkin.cgi?id=[example_id] http://www.theseed.org/linkin.cgi?id=fig|83331.1.peg.1 \N
169 SGD Saccharomyces Genome Database Identifier for SGD Loci http://www.yeastgenome.org/ http://db.yeastgenome.org/cgi-bin/locus.pl?dbid=[example_id] http://db.yeastgenome.org/cgi-bin/locus.pl?dbid=S000006169 \N
170 SGD_LOCUS Saccharomyces Genome Database Gene name (gene symbol in mammalian nomenclature) http://www.yeastgenome.org/ http://db.yeastgenome.org/cgi-bin/locus.pl?locus=[example_id] http://db.yeastgenome.org/cgi-bin/locus.pl?locus=GAL4 \N
171 SGD_REF Saccharomyces Genome Database Literature Reference Identifier http://www.yeastgenome.org/ http://db.yeastgenome.org/cgi-bin/reference/reference.pl?dbid=[example_id] http://db.yeastgenome.org/cgi-bin/reference/reference.pl?dbid=S000049602 \N
172 SGN Sol Genomics Network Gene identifier http://www.sgn.cornell.edu/ http://www.sgn.cornell.edu/phenome/locus_display.pl?locus_id=[example_id] http://www.sgn.cornell.edu/phenome/locus_display.pl?locus_id=4476 \N
173 SGN_ref Sol Genomics Network Reference identifier http://www.sgn.cornell.edu/ http://www.sgn.cornell.edu/chado/publication.pl?pub_id=[example_id] http://www.sgn.cornell.edu/chado/publication.pl?pub_id=861 \N
174 SMART Simple Modular Architecture Research Tool Accession http://smart.embl-heidelberg.de/ http://smart.embl-heidelberg.de/smart/do_annotation.pl?BLAST=DUMMY&DOMAIN=[example_id] http://smart.embl-heidelberg.de/smart/do_annotation.pl?BLAST=DUMMY&DOMAIN=SM00005 \N
175 SMD Stanford Microarray Database \N http://genome-www.stanford.edu/microarray \N \N \N
176 SO Sequence Ontology Identifier http://sequenceontology.org/ http://song.sourceforge.net/SOterm_tables.html#[example_id] http://song.sourceforge.net/SOterm_tables.html#SO:0000195 \N
177 SP_KW UniProt Knowledgebase keywords Identifier http://www.uniprot.org/keywords/ http://www.uniprot.org/keywords/[example_id] http://www.uniprot.org/keywords/KW-0812 \N
178 SP_SL UniProt Subcellular Location vocabulary Identifier http://beta.uniprot.org/docs/subcell \N \N \N
179 SUBTILIST Bacillus subtilis Genome Sequence Project Accession number http://genolist.pasteur.fr/SubtiList/ \N \N \N
180 SUBTILISTG Bacillus subtilis Genome Sequence Project Gene symbol http://genolist.pasteur.fr/SubtiList/ \N \N \N
181 SUPERFAMILY SUPERFAMILY. A database of structural and functional protein annotations for completely sequenced genomes \N http://supfam.mrc-lmb.cam.ac.uk/SUPERFAMILY/ \N \N \N
182 Swiss-Prot UniProtKB/Swiss-Prot, a curated protein sequence database which provides a high level of annotation and a minimal level of redundancy Accession number http://www.uniprot.org http://www.ebi.uniprot.org/entry/[example_id] http://www.ebi.uniprot.org/entry/P51587 \N
183 TAIR The Arabidopsis Information Resource Accession number http://www.arabidopsis.org/ http://arabidopsis.org/servlets/TairObject?accession=[example_id] http://arabidopsis.org/servlets/TairObject?accession=gene:2062713 \N
184 taxon NCBI Taxonomy Identifier http://www.ncbi.nlm.nih.gov/Taxonomy/taxonomyhome.html/ http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=[example_id] http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=3702 \N
185 TC The Transport Protein Database Identifier http://www.tcdb.org/ http://www.tcdb.org/tcdb/index.php?tc=[example_id] http://www.tcdb.org/tcdb/index.php?tc=9.A.4.1.1 \N
186 TGD Tetrahymena Genome Database \N http://www.ciliate.org/ \N \N \N
187 TGD_LOCUS Tetrahymena Genome Database Gene name (gene symbol in mammalian nomenclature) http://www.ciliate.org/ http://db.ciliate.org/cgi-bin/locus.pl?locus=[example_id] http://db.ciliate.org/cgi-bin/locus.pl?locus=PDD1 \N
188 TGD_REF Tetrahymena Genome Database Literature Reference Identifier http://www.ciliate.org/ http://db.ciliate.org/cgi-bin/reference/reference.pl?dbid=[example_id] http://db.ciliate.org/cgi-bin/reference/reference.pl?dbid=T000005818 \N
189 TRAIT TRAnscript Integrated Table, an integrated database of transcripts expressed in human skeletal muscle \N http://muscle.cribi.unipd.it/ \N \N \N
190 TRANSFAC TRANSFAC database of eukaryotic transcription factors \N http://www.gene-regulation.com/pub/databases.html#transfac \N \N \N
191 TrEMBL UniProtKB-TrEMBL, a computer-annotated protein sequence database supplementing UniProtKB and containing the translations of all coding sequences (CDS) present in the EMBL Nucleotide Sequence Database but not yet integrated in UniProtKB/Swiss-Prot Accession number http://www.uniprot.org http://www.ebi.uniprot.org/entry/[example_id] http://www.ebi.uniprot.org/entry/O31124 \N
192 UM-BBD The University of Minnesota Biocatalysis/Biodegradation Database Prefix http://umbbd.msi.umn.edu/ \N \N \N
193 UM-BBD_enzymeID The University of Minnesota Biocatalysis/Biodegradation Database Enzyme identifier http://umbbd.msi.umn.edu/ http://umbbd.msi.umn.edu/servlets/pageservlet?ptype=ep&enzymeID=[example_id] http://umbbd.msi.umn.edu/servlets/pageservlet?ptype=ep&enzymeID=e0230 \N
194 UM-BBD_pathwayID The University of Minnesota Biocatalysis/Biodegradation Database Pathway identifier http://umbbd.msi.umn.edu/ \N http://umbbd.msi.umn.edu/acr/acr_map.html \N
195 UM-BBD_reactionID The University of Minnesota Biocatalysis/Biodegradation Database Reaction identifier http://umbbd.msi.umn.edu/ http://umbbd.msi.umn.edu/servlets/pageservlet?ptype=r&reacID=[example_id] http://umbbd.msi.umn.edu/servlets/pageservlet?ptype=r&reacID=r0129 \N
196 UM-BBD_ruleID The University of Minnesota Biocatalysis/Biodegradation Database Rule identifier http://umbbd.msi.umn.edu/ http://umbbd.msi.umn.edu/servlets/rule.jsp?rule=[example_id] http://umbbd.msi.umn.edu/servlets/rule.jsp?rule=bt0330 \N
197 UniParc UniProt Archive; a non-redundant archive of protein sequences extracted from Swiss-Prot, TrEMBL, PIR-PSD, EMBL, Ensembl, IPI, PDB, RefSeq, FlyBase, WormBase, European Patent Office, United States Patent and Trademark Office, and Japanese Patent Office Accession number http://www.ebi.ac.uk/uniparc/ http://www.ebi.ac.uk/cgi-bin/dbfetch?db=uniparc&id=[example_id] http://www.ebi.ac.uk/cgi-bin/dbfetch?db=uniparc&id=UPI000000000A \N
198 UniProtKB The Universal Protein Knowledgebase, a central repository of protein sequence and function created by joining the information contained in Swiss-Prot, TrEMBL, and PIR Accession number http://www.uniprot.org http://www.ebi.uniprot.org/entry/[example_id] http://www.ebi.uniprot.org/entry/P51587 \N
199 VBRC Viral Bioinformatics Resource Center Identifier http://vbrc.org http://vbrc.org/query.asp?web_id=VBRC:[example_id] http://vbrc.org/query.asp?web_id=VBRC:F35742 \N
200 VEGA The Vertebrate Genome Annotation database Identifier http://vega.sanger.ac.uk/index.html http://vega.sanger.ac.uk/perl/searchview?species=all&idx=All&q=[example_id] http://vega.sanger.ac.uk/perl/searchview?species=all&idx=All&q=OTTHUMP00000000661 \N
201 VIDA Virus Database at University College London \N http://www.biochem.ucl.ac.uk/bsm/virus_database/VIDA.html \N \N \N
202 VMD Virginia Bioinformatics Institute Microbial Database Gene identifier http://phytophthora.vbi.vt.edu http://vmd.vbi.vt.edu/cgi-bin/browse/browserDetail_new.cgi?gene_id=[example_id] http://vmd.vbi.vt.edu/cgi-bin/browse/browserDetail_new.cgi?gene_id=109198 \N
203 WB WormBase, database of nematode biology Gene identifier http://www.wormbase.org/ http://www.wormbase.org/db/gene/gene?name=[example_id] http://www.wormbase.org/db/get?class=Gene;name=WBGene00003001 \N
204 WB_REF WormBase, database of nematode biology Literature Reference Identifier http://www.wormbase.org/ http://www.wormbase.org/db/misc/paper?name=[example_id] http://www.wormbase.org/db/misc/paper?name=WBPaper00004823 \N
205 WP Wormpep, database of proteins of C. elegans Identifier http://www.wormbase.org/ http://www.wormbase.org/db/get?class=Protein;name=WP:[example_id] http://www.wormbase.org/db/get?class=Protein;name=WP:CE15104 \N
206 YeastFunc Yeast Function \N http://func.med.harvard.edu/yeast/ \N \N \N
207 ZFIN The Zebrafish Information Network Accession ID http://zfin.org/ http://zfin.org/cgi-bin/ZFIN_jump?record=[example_id] http://zfin.org/cgi-bin/ZFIN_jump?record=ZDB-GENE-990415-103 \N
208 FlyBase \N \N \N \N \N \N
209 Roslin_Institute \N \N \N \N \N \N
210 UniProt \N \N \N \N \N \N
211 TIGR \N \N \N \N \N \N
212 WormBase \N \N \N \N \N \N
bioinformatics database1
bioinformatics database1:
1 AgBase AgBase resource for functional analysis of agricultural plant and animal gene products \N http://www.agbase.msstate.edu/ http://www.agbase.msstate.edu/cgi-bin/getEntry.pl?db_pick=[ChickGO/MaizeGO]&uid=[example_id] \N \N
2 AGI_LocusCode Arabidopsis Genome Initiative (TAIR, TIGR, MIPS) Locus identifier http://www.arabidopsis.org http://arabidopsis.org/servlets/TairObject?type=locus&name=[example_id] http://arabidopsis.org/servlets/TairObject?type=locus&name=At2g17950 \N
3 AGRICOLA_ID AGRICultural OnLine Access AGRICOLA call number http://agricola.nal.usda.gov/ \N \N \N
4 AGRICOLA_IND AGRICultural OnLine Access AGRICOLA IND number http://agricola.nal.usda.gov/ \N \N \N
5 ApiDB_PlasmoDB PlasmoDB Plasmodium Genome Resource PlasmoDB Gene ID http://plasmodb.org/ http://www.plasmodb.org/gene/[example_id] http://www.plasmodb.org/gene/PF11_0344 \N
6 AraCyc AraCyc metabolic pathway database for Arabidopsis thaliana Identifier http://www.arabidopsis.org/biocyc/index.jsp http://www.arabidopsis.org:1555/ARA/NEW-IMAGE?type=NIL&object=[example_id] http://www.arabidopsis.org:1555/ARA/NEW-IMAGE?type=NIL&object=PWYQT-62 \N
7 ASAP A Systematic Annotation Package for Community Analysis of Genomes Feature identifier https://asap.ahabs.wisc.edu/annotation/php/ASAP1.htm https://asap.ahabs.wisc.edu/annotation/php/feature_info.php?FeatureID=[example_id] https://asap.ahabs.wisc.edu/annotation/php/feature_info.php?FeatureID=ABE-0000008 \N
8 BHF-UCL Cardiovascular Gene Ontology Annotation Initiative; supported by the British Heart Foundation (BHF) at University College London (UCL) \N http://www.cardiovasculargeneontology.com \N \N \N
9 BIOMD BioModels Database Accession http://www.ebi.ac.uk/biomodels/ http://www.ebi.ac.uk/compneur-srv/biomodels-main/publ-model.do?mid=[example_id] http://www.ebi.ac.uk/compneur-srv/biomodels-main/publ-model.do?mid=BIOMD0000000045 \N
10 bioPIXIE_MEFIT biological Process Inference from eXperimental Interaction Evidence/Microarray Experiment Functional Integration Technology \N http://avis.princeton.edu/mefit/ \N \N \N
11 BIOSIS BIOSIS previews Identifier http://www.biosis.org/ \N \N \N
12 BRENDA BRENDA, The Comprehensive Enzyme Information System EC enzyme identifier http://www.brenda.uni-koeln.de/ http://www.brenda.uni-koeln.de/php/result_flat.php4?ecno=[example_id] http://www.brenda.uni-koeln.de/php/result_flat.php4?ecno=4.2.1.3 \N
13 Broad Broad Institute \N http://www.broad.mit.edu/ \N \N \N
14 Broad_MGG Magnaporthe grisea Database at the Broad Institute Locus http://www.broad.mit.edu/annotation/genome/magnaporthe_grisea/Home.html http://www.broad.mit.edu/annotation/genome/magnaporthe_grisea/GeneLocus.html?sp=S[example_id] http://www.broad.mit.edu/annotation/genome/magnaporthe_grisea/GeneLocus.html?sp=SMGG_05132 \N
15 CASGEN Catalog of Fishes genus database Identifier http://research.calacademy.org/research/ichthyology/catalog/fishcatsearch.html http://research.calacademy.org/research/ichthyology/catalog/getname.asp?rank=Genus&id=[example_id] http://research.calacademy.org/research/ichthyology/catalog/getname.asp?rank=Genus&id=1040 \N
16 CASSPC Catalog of Fishes species database Identifier http://research.calacademy.org/research/ichthyology/catalog/fishcatsearch.html http://research.calacademy.org/research/ichthyology/catalog/getname.asp?rank=Species&id=[example_id] http://research.calacademy.org/research/ichthyology/catalog/getname.asp?rank=Species&id=1979 \N
17 CBS Center for Biological Sequence Analysis prediction tool http://www.cbs.dtu.dk/ \N http://www.cbs.dtu.dk/services/[example_id]/ \N
18 CDD Conserved Domain Database at NCBI Identifier http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=cdd http://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=[example_id] http://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=34222 \N
19 CGD Candida Genome Database Identifier for CGD Loci http://www.candidagenome.org/ http://www.candidagenome.org/cgi-bin/locus.pl?dbid=[example_id] http://www.candidagenome.org/cgi-bin/locus.pl?dbid=CAL0005516 \N
20 CGD_LOCUS Candida Genome Database Gene name (gene symbol in mammalian nomenclature) http://www.candidagenome.org/ http://www.candidagenome.org/cgi-bin/locus.pl?locus=[example_id] http://www.candidagenome.org/cgi-bin/locus.pl?locus=HWP1 \N
21 CGD_REF Candida Genome Database Literature Reference Identifier http://www.candidagenome.org/ http://www.candidagenome.org/cgi-bin/reference/reference.pl?refNo=[example_id] http://www.candidagenome.org/cgi-bin/reference/reference.pl?refNo=1490 \N
22 CGEN Compugen Gene Ontology Gene Association Data Identifier http://www.cgen.com/ \N \N \N
23 CGSC CGSC: E.coli Genetic Stock Center Gene symbol http://cgsc.biology.yale.edu/ \N http://cgsc.biology.yale.edu/Site.php?ID=315 \N
24 ChEBI Chemical Entities of Biological Interest Identifier http://www.ebi.ac.uk/chebi/ http://www.ebi.ac.uk/chebi/searchId.do?chebiId=CHEBI:[example_id] http://www.ebi.ac.uk/chebi/searchId.do?chebiId=CHEBI:17234 \N
25 CL Cell Type Ontology Identifier https://lists.sourceforge.net/lists/listinfo/obo-cell-type \N \N \N
26 COG NCBI Clusters of Orthologous Groups \N http://www.ncbi.nlm.nih.gov/COG/ \N \N \N
27 COG_Cluster NCBI COG cluster Identifier http://www.ncbi.nlm.nih.gov/COG/ http://www.ncbi.nlm.nih.gov/COG/new/release/cow.cgi?cog=[example_id] http://www.ncbi.nlm.nih.gov/COG/new/release/cow.cgi?cog=COG0001 \N
28 COG_Function NCBI COG function Identifier http://www.ncbi.nlm.nih.gov/COG/ http://www.ncbi.nlm.nih.gov/COG/grace/shokog.cgi?fun=[example_id] http://www.ncbi.nlm.nih.gov/COG/grace/shokog.cgi?fun=H \N
29 COG_Pathway NCBI COG pathway Identifier http://www.ncbi.nlm.nih.gov/COG/ http://www.ncbi.nlm.nih.gov/COG/new/release/coglist.cgi?pathw=[example_id] http://www.ncbi.nlm.nih.gov/COG/new/release/coglist.cgi?pathw=14 \N
30 CORUM CORUM – the Comprehensive Resource of Mammalian protein complexes Identifier http://mips.gsf.de/genre/proj/corum/ http://mips.gsf.de/genre/proj/corum/complexdetails.html?id=[example_id] http://mips.gsf.de/genre/proj/corum/complexdetails.html?id=837 \N
31 dictyBase dictyBase Identifier http://dictybase.org http://dictybase.org/db/cgi-bin/gene_page.pl?dictybaseid=[example_id] http://dictybase.org/db/cgi-bin/gene_page.pl?dictybaseid=DDB0001836 \N
32 dictyBase_gene_name dictyBase Gene name http://dictybase.org http://dictybase.org/db/cgi-bin/gene_page.pl?gene_name=[example_id] http://dictybase.org/db/cgi-bin/gene_page.pl?gene_name=mlcE \N
33 dictyBase_REF dictyBase literature references Literature Reference Identifier http://dictybase.org http://dictybase.org/db/cgi-bin/dictyBase/reference/reference.pl?refNo=[example_id] http://dictybase.org/db/cgi-bin/dictyBase/reference/reference.pl?refNo=10157 \N
34 DOI Digital Object Identifier Identifier http://dx.doi.org/ http://dx.doi.org/[example_id] http://dx.doi.org/DOI:10.1016/S0963-9969(99)00021-6 \N
35 EC The Enzyme Commission \N http://ww.expasy.org/enzyme/ http://www.expasy.org/enzyme/[example_id] http://www.expasy.org/enzyme/1.4.3.6 \N
36 EchoBASE EchoBASE post-genomic database for Escherichia coli Identifier http://www.ecoli-york.org/ http://www.biolws1.york.ac.uk/echobase/Gene.cfm?recordID=[example_id] http://www.biolws1.york.ac.uk/echobase/Gene.cfm?recordID=EB0231 \N
37 ECK The EcoGene Database of Escherichia coli Sequence and Function ECK accession number (E. coli K-12 gene identifier) http://www.ecogene.org/ http://www.ecogene.org/geneInfo.php?eck_id=[example_id] http://www.ecogene.org/geneInfo.php?eck_id=ECK3746 \N
38 EcoCyc The Encyclopedia of E. coli metabolism Pathway identifier http://ecocyc.org/ http://biocyc.org/ECOLI/NEW-IMAGE?type=PATHWAY&object=[example_id] http://biocyc.org/ECOLI/NEW-IMAGE?type=PATHWAY&object=P2-PWY \N
39 EcoCyc_REF The Encyclopedia of E. coli metabolism Reference identifier http://ecocyc.org/ http://biocyc.org/ECOLI/reference.html?type=CITATION-FRAME&object=[example_id] http://biocyc.org/ECOLI/reference.html?type=CITATION-FRAME&object=COLISALII \N
40 ECOGENE The EcoGene Database of Escherichia coli Sequence and Function EcoGene Accession Number http://www.ecogene.org/ http://www.ecogene.org/geneInfo.php?eg_id=[example_id] http://www.ecogene.org/geneInfo.php?eg_id=EG10818 \N
41 ECOGENE_G The EcoGene Database of Escherichia coli Sequence and Function EcoGene Primary Gene Name http://www.ecogene.org/ \N \N \N
42 EcoliWiki EcoliWiki, EcoliHub’s subsystem for community annotation of E. coli K-12 \N http://ecoliwiki.net/ \N \N \N
43 EMBL International Nucleotide Sequence Database Collaboration, comprising EMBL-EBI International Nucleotide Sequence Data Library (EMBL-Bank), DNA DataBank of Japan (DDBJ), and NCBI GenBank Sequence accession number http://www.ebi.ac.uk/embl/ http://www.ebi.ac.uk/cgi-bin/emblfetch?style=html&Submit=Go&id=[example_id] http://www.ebi.ac.uk/cgi-bin/emblfetch?style=html&Submit=Go&id=AA816246 \N
44 DDBJ International Nucleotide Sequence Database Collaboration, comprising EMBL-EBI International Nucleotide Sequence Data Library (EMBL-Bank), DNA DataBank of Japan (DDBJ), and NCBI GenBank Sequence accession number http://www.ddbj.nig.ac.jp/ http://arsa.ddbj.nig.ac.jp/arsa/ddbjSplSearch?KeyWord=[example_id] http://arsa.ddbj.nig.ac.jp/arsa/ddbjSplSearch?KeyWord=AA816246 \N
45 GenBank International Nucleotide Sequence Database Collaboration, comprising EMBL-EBI International Nucleotide Sequence Data Library (EMBL-Bank), DNA DataBank of Japan (DDBJ), and NCBI GenBank Sequence accession number http://www.ncbi.nlm.nih.gov/Genbank/ http://www.ncbi.nlm.nih.gov/entrez/viewer.fcgi?db=nucleotide&val=[example_id] http://www.ncbi.nlm.nih.gov/entrez/viewer.fcgi?db=nucleotide&val=AA816246 \N
46 ENSEMBL Database of automatically annotated genomic data Identifier http://www.ensembl.org/ http://www.ensembl.org/perl/protview?peptide=[example_id] http://www.ensembl.org/perl/protview?peptide=ENSP00000265949 \N
47 ENZYME The Swiss Institute of Bioinformatics database of Enzymes Identifier http://www.expasy.ch/ http://www.expasy.ch/cgi-bin/nicezyme.pl?[example_id] http://www.expasy.ch/cgi-bin/nicezyme.pl?1.1.1.1 \N
48 FB FlyBase Gene identifier http://flybase.org/ http://flybase.org/reports/[example_id].html http://flybase.org/reports/FBgn0000024.html \N
49 GDB Human Genome Database Accession number http://www.gdb.org/ http://www.gdb.org/gdb-bin/genera/accno?accessionNum=GDB:[example_id] http://www.gdb.org/gdb-bin/genera/accno?accessionNum=GDB:306600 \N
50 Gene3D Domain Architecture Classification \N http://gene3d.biochem.ucl.ac.uk/Gene3D/ \N \N \N
51 GeneDB_Gmorsitans GeneDB_Gmorsitans Gene identifier http://www.genedb.org/genedb/glossina/ http://www.genedb.org/genedb/Search?organism=glossina&name=[example_id] http://www.genedb.org/genedb/Search?organism=glossina&name=Gmm-0142 \N
52 GeneDB_Lmajor GeneDB_Lmajor Gene identifier http://www.genedb.org/genedb/leish/ http://www.genedb.org/genedb/Search?organism=leish&name=[example_id] http://www.genedb.org/genedb/Search?organism=leish&name=LM5.32 \N
53 GeneDB_Pfalciparum GeneDB_Pfalciparum Gene identifier http://www.genedb.org/genedb/malaria/ http://www.genedb.org/genedb/Search?organism=malaria&name=[example_id] http://www.genedb.org/genedb/Search?organism=malaria&name=PFD0755c \N
54 GeneDB_Spombe GeneDB_Spombe Gene identifier http://www.genedb.org/genedb/pombe/ http://www.genedb.org/genedb/Search?organism=pombe&name=[example_id] http://www.genedb.org/genedb/Search?organism=pombe&name=SPAC890.04C \N
55 GeneDB_Tbrucei GeneDB_Tbrucei Gene identifier http://www.genedb.org/genedb/tryp/ http://www.genedb.org/genedb/Search?organism=tryp&name=[example_id] http://www.genedb.org/genedb/Search?organism=tryp&name=Tb927.1.5250 \N
56 GenProtEC GenProtEC E. coli genome and proteome database \N http://genprotec.mbl.edu/ \N \N \N
57 GermOnline GermOnline \N http://www.germonline.org/ \N \N \N
58 GO Gene Ontology Database Identifier http://amigo.geneontology.org/ http://amigo.geneontology.org/cgi-bin/amigo/term-details.cgi?term=GO:[example_id] http://amigo.geneontology.org/cgi-bin/amigo/term-details.cgi?term=GO:0004352 \N
59 GO_REF Gene Ontology Database references Accession (for reference) http://www.geneontology.org/ http://www.geneontology.org/cgi-bin/references.cgi#GO_REF:[example_id] http://www.geneontology.org/cgi-bin/references.cgi#GO_REF:0000001 \N
60 GOA GO Annotation at EBI \N http://www.ebi.ac.uk/goa/ \N \N \N
61 GOC Gene Ontology Consortium \N http://www.geneontology.org/ \N \N \N
62 GR Gramene: A Comparative Mapping Resource for Grains Identifier (any) http://www.gramene.org/ http://www.gramene.org/db/searches/browser?search_type=All&RGN=on&query=[example_id] http://www.gramene.org/db/searches/browser?search_type=All&RGN=on&query=sd1 \N
63 GR_GENE Gramene: A Comparative Mapping Resource for Grains Gene identifier http://www.gramene.org/ http://www.gramene.org/db/genes/search_gene?acc=[example_id] http://www.gramene.org/db/genes/search_gene?acc=GR:0060198 \N
64 GR_PROTEIN Gramene: A Comparative Mapping Resource for Grains Protein identifier http://www.gramene.org/ http://www.gramene.org/db/protein/protein_search?acc=[example_id] http://www.gramene.org/db/protein/protein_search?acc=Q6VSV0 \N
65 GR_QTL Gramene: A Comparative Mapping Resource for Grains QTL identifier http://www.gramene.org/ http://www.gramene.org/db/qtl/qtl_display?qtl_accession_id=[example_id] http://www.gramene.org/db/qtl/qtl_display?qtl_accession_id=CQU7 \N
66 GR_REF Gramene: A Comparative Mapping Resource for Grains Reference http://www.gramene.org/ http://www.gramene.org/db/literature/pub_search?ref_id=[example_id] http://www.gramene.org/db/literature/pub_search?ref_id=659 \N
67 H-invDB H-invitational Database \N http://www.h-invitational.jp/ \N \N \N
68 H-invDB_cDNA H-invitational Database Accession http://www.h-invitational.jp/ http://www.h-invitational.jp/hinv/spsoup/transcript_view?acc_id=[example_id] http://www.h-invitational.jp/hinv/spsoup/transcript_view?acc_id=AK093149 \N
69 H-invDB_locus H-invitational Database Cluster identifier http://www.h-invitational.jp/ http://www.h-invitational.jp/hinv/spsoup/locus_view?hix_id=[example_id] http://www.h-invitational.jp/hinv/spsoup/locus_view?hix_id=HIX0014446 \N
70 HAMAP High-quality Automated and Manual Annotation of microbial Proteomes Identifier http://us.expasy.org/sprot/hamap/ http://us.expasy.org/unirules/[example_id] http://us.expasy.org/unirules/MF_00031 \N
71 HGNC HUGO Gene Nomenclature Committee Identifier http://www.genenames.org/ http://www.genenames.org/data/hgnc_data.php?hgnc_id=HGNC:[example_id] http://www.genenames.org/data/hgnc_data.php?hgnc_id=HGNC:29 \N
72 HGNC_gene HUGO Gene Nomenclature Committee Gene symbol http://www.genenames.org/ http://www.genenames.org/data/hgnc_data.php?app_sym=[example_id] http://www.genenames.org/data/hgnc_data.php?app_sym=ABCA1 \N
73 HPA Human Protein Atlas tissue profile information Identifier http://www.proteinatlas.org/ http://www.proteinatlas.org/tissue_profile.php?antibody_id=[example_id] http://www.proteinatlas.org/tissue_profile.php?antibody_id=HPA000237 \N
74 HPA_antibody Human Protein Atlas antibody information Identifier http://www.proteinatlas.org/ http://www.proteinatlas.org/antibody_info.php?antibody_id=[example_id] http://www.proteinatlas.org/antibody_info.php?antibody_id=HPA000237 \N
75 HUGO Human Genome Organisation \N http://www.hugo-international.org/ \N \N \N
76 IMG Integrated Microbial Genomes; JGI web site for genome annotation Identifier http://img.jgi.doe.gov http://img.jgi.doe.gov/cgi-bin/pub/main.cgi?section=GeneDetail&page=geneDetail&gene_oid=[example_id] http://img.jgi.doe.gov/cgi-bin/pub/main.cgi?section=GeneDetail&page=geneDetail&gene_oid=640008772 \N
77 IMGT_HLA Immunogenetics database, human MHC \N http://www.ebi.ac.uk/imgt/hla \N \N \N
78 IMGT_LIGM Immunogenetics database, immunoglobulins and T-cell receptors \N http://imgt.cines.fr \N \N \N
79 IntAct IntAct protein interaction database Accession http://www.ebi.ac.uk/intact/ http://www.ebi.ac.uk/intact/search/do/search?searchString=[example_id] http://www.ebi.ac.uk/intact/search/do/search?searchString=EBI-17086 \N
80 InterPro The InterPro database of protein domains and motifs Identifier http://www.ebi.ac.uk/interpro/ http://www.ebi.ac.uk/interpro/DisplayIproEntry?ac=[example_id] http://www.ebi.ac.uk/interpro/DisplayIproEntry?ac=IPR000001 \N
81 IPI International Protein Index Identifier http://www.ebi.ac.uk/IPI/IPIhelp.html \N \N \N
82 ISBN International Standard Book Number Identifier http://isbntools.com/ http://my.linkbaton.com/get?lbCC=q&nC=q&genre=book&item=[example_id] http://my.linkbaton.com/get?lbCC=q&nC=q&genre=book&item=0781702534 \N
83 ISSN International Standard Serial Number Identifier http://www.issn.org/ \N \N \N
84 IUPHAR The International Union of Pharmacology \N http://www.iuphar.org/ \N \N \N
85 IUPHAR_GPCR The International Union of Pharmacology G-protein-coupled receptor family identifier http://www.iuphar.org/ http://www.iuphar-db.org/GPCR/ChapterMenuForward?chapterID=[example_id] http://www.iuphar-db.org/GPCR/ChapterMenuForward?chapterID=1279 \N
86 IUPHAR_RECEPTOR The International Union of Pharmacology Receptor identifier http://www.iuphar.org/ http://www.iuphar-db.org/GPCR/ReceptorDisplayForward?receptorID=[example_id] http://www.iuphar-db.org/GPCR/ReceptorDisplayForward?receptorID=2205 \N
87 JCVI The J. Craig Venter Institute \N http://www.jcvi.org/ \N \N \N
88 JCVI_Ath1 The J. Craig Venter Institute, Arabidopsis thaliana database Accession http://www.tigr.org/tdb/e2k1/ath1/ath1.shtml http://www.tigr.org/tigr-scripts/euk_manatee/shared/ORF_infopage.cgi?db=ath1&orf=[example_id] http://www.tigr.org/tigr-scripts/euk_manatee/shared/ORF_infopage.cgi?db=ath1&orf=At3g01440 \N
89 JCVI_CMR The J. Craig Venter Institute, Comprehensive Microbial Resource Locus http://cmr.jcvi.org/ http://cmr.jcvi.org/cgi-bin/CMR/shared/GenePage.cgi?locus=[example_id] http://cmr.jcvi.org/cgi-bin/CMR/shared/GenePage.cgi?locus=VCA0557 \N
90 JCVI_EGAD The J. Craig Venter Institute, EGAD database Accession http://cmr.jcvi.org/ http://cmr.jcvi.org/cgi-bin/CMR/EgadSearch.cgi?search_string=[example_id] http://cmr.jcvi.org/cgi-bin/CMR/EgadSearch.cgi?search_string=74462 \N
91 JCVI_GenProp The J. Craig Venter Institute, Genome Properties Accession http://cmr.jcvi.org/ http://cmr.jcvi.org/cgi-bin/CMR/shared/GenomePropDefinition.cgi?prop_acc=[example_id] http://cmr.jcvi.org/cgi-bin/CMR/shared/GenomePropDefinition.cgi?prop_acc=GenProp0120 \N
92 JCVI_Pfa1 The J. Craig Venter Institute, Plasmodium falciparum database Accession http://www.tigr.org/tdb/e2k1/pfa1/pfa1.shtml http://www.tigr.org/tigr-scripts/euk_manatee/shared/ORF_infopage.cgi?db=pfa1&orf=[example_id] http://www.tigr.org/tigr-scripts/euk_manatee/shared/ORF_infopage.cgi?db=pfa1&orf=PFB0010w \N
93 JCVI_REF The J. Craig Venter Institute Reference locator http://cmr.jcvi.org/ \N http://cmr.jcvi.org/CMR/AnnotationSops.shtml \N
94 JCVI_Tba1 The J. Craig Venter Institute, Trypanosoma brucei database Accession http://www.tigr.org/tdb/e2k1/tba1/ http://www.tigr.org/tigr-scripts/euk_manatee/shared/ORF_infopage.cgi?db=tba1&orf=[example_id] http://www.tigr.org/tigr-scripts/euk_manatee/shared/ORF_infopage.cgi?db=tba1&orf=25N14.10 \N
95 JCVI_TIGRFAMS The J. Craig Venter Institute, TIGRFAMs HMM collection Accession http://cmr.jcvi.org/ http://cmr.jcvi.org/cgi-bin/CMR/HmmReport.cgi?hmm_acc=[example_id] http://cmr.jcvi.org/cgi-bin/CMR/HmmReport.cgi?hmm_acc=TIGR00254 \N
96 KEGG Kyoto Encyclopedia of Genes and Genomes \N http://www.genome.ad.jp/kegg/ \N \N \N
97 KEGG_PATHWAY KEGG Pathways Database Pathway http://www.genome.ad.jp/kegg/docs/upd_pathway.html http://www.genome.ad.jp/dbget-bin/www_bget?path:[example_id] http://www.genome.ad.jp/dbget-bin/www_bget?path:ot00020 \N
98 KEGG_LIGAND KEGG LIGAND Database Compound http://www.genome.ad.jp/kegg/docs/upd_ligand.html http://www.genome.ad.jp/dbget-bin/www_bget?cpd:[example_id] http://www.genome.ad.jp/dbget-bin/www_bget?cpd:C00577 \N
99 LIFEdb LIFEdb, a database for the integration and dissemination of functional data cDNA clone identifier http://www.lifedb.de/ http://www.dkfz.de/LIFEdb/LIFEdb.aspx?ID=[example_id] http://www.dkfz.de/LIFEdb/LIFEdb.aspx?ID=DKFZp564O1716 \N
100 LOCSVMpsi LOCSVMPSI: subcellular localization for eukayotic proteins based on SVM and PSI-BLAST \N http://bioinformatics.ustc.edu.cn/locsvmpsi/locsvmpsi.php \N \N \N